traseR

DOI: 10.18129/B9.bioc.traseR    

This is the development version of traseR; for the stable release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: Development (3.8)

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("traseR", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

 

PDF R Script Perform GWAS trait-associated SNP enrichment analyses in genomic intervals
PDF   Reference Manual

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
LinkingTo
Suggests BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package traseR_1.11.0.tar.gz
Windows Binary traseR_1.11.0.zip
Mac OS X 10.11 (El Capitan) traseR_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/traseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/traseR
Package Short Url http://bioconductor.org/packages/traseR/
Package Downloads Report Download Stats

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