To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")

In most cases, you don't need to download the package archive at all.

Rqc

DOI: 10.18129/B9.bioc.Rqc    

This is the development version of Rqc; for the stable release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: Development (3.7)

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")

Documentation

HTML R Script Using Rqc
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, QualityControl, Sequencing, Software
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 2)
Depends BiocParallel, ShortRead, ggplot2
Imports BiocGenerics, Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
LinkingTo Rcpp
Suggests testthat
SystemRequirements
Enhances
URL https://github.com/labbcb/Rqc
BugReports https://github.com/labbcb/Rqc/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rqc_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) Rqc_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rqc
Package Short Url http://bioconductor.org/packages/Rqc/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: