DOI: 10.18129/B9.bioc.GenomicFiles    

This is the development version of GenomicFiles; for the stable release version, see GenomicFiles.

Distributed computing by file or by range

Bioconductor version: Development (3.15)

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Bioconductor Package Maintainer Obenchain <maintainer at>, Valerie Love <maintainer at>, Michael Shepherd <maintainer at>, Lori Morgan <maintainer at>, Martin Obenchain <maintainer at>

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("GenomicFiles")):


To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual
Video   Reading from a BAM file - Part 2


biocViews Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software
Version 1.31.0
In Bioconductor since BioC 2.14 (R-3.1) (7.5 years)
License Artistic-2.0
Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), MatrixGenerics, GenomicRanges(>= 1.31.16), SummarizedExperiment, BiocParallel(>= 1.1.0), Rsamtools(>= 1.17.29), rtracklayer(>= 1.25.3)
Imports GenomicAlignments(>= 1.7.7), IRanges, S4Vectors(>= 0.9.25), VariantAnnotation(>= 1.27.9), GenomeInfoDb
Suggests BiocStyle, RUnit, genefilter, deepSNV, snpStats, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
Depends On Me erma
Imports Me CAGEfightR, contiBAIT, derfinder, ldblock, QuasR, Rqc, VCFArray
Suggests Me TFutils
Links To Me
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