To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

In most cases, you don't need to download the package archive at all.

GenomicFiles

Distributed computing by file or by range

Bioconductor version: Release (3.0)

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Valerie Obenchain, Michael Love, Martin Morgan

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomicFiles")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicFiles")

 

PDF R Script Introduction to GenomicFiles
PDF   Reference Manual
Text   NEWS
Video   Reading from a BAM file - Part 2

Details

biocViews DataImport, Infrastructure, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), Rsamtools(>= 1.17.29), GenomicRanges(>= 1.17.16), rtracklayer(>= 1.25.3), BiocParallel(>= 0.7.0)
Imports GenomicAlignments, IRanges
Suggests BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14
System Requirements
URL
Depends On Me
Imports Me derfinder
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicFiles_1.2.0.tar.gz
Windows Binary GenomicFiles_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GenomicFiles_1.2.0.tgz
Mac OS X 10.9 (Mavericks) GenomicFiles_1.2.0.tgz
Browse/checkout source (username/password: readonly)
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