To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

In most cases, you don't need to download the package archive at all.

GenomicFiles

 

   

Distributed computing by file or by range

Bioconductor version: Release (3.3)

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Valerie Obenchain, Michael Love, Martin Morgan

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomicFiles")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicFiles")

 

PDF R Script Introduction to GenomicFiles
PDF   Reference Manual
Video   Reading from a BAM file - Part 2

Details

biocViews Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 2.14 (R-3.1) (2.5 years)
License Artistic-2.0
Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), GenomicRanges(>= 1.23.21), SummarizedExperiment, BiocParallel(>= 1.1.0), Rsamtools(>= 1.17.29), rtracklayer(>= 1.25.3)
Imports GenomicAlignments(>= 1.7.7), Biobase, IRanges, S4Vectors(>= 0.9.25), VariantAnnotation, GenomeInfoDb
LinkingTo
Suggests BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
SystemRequirements
Enhances
URL
Depends On Me
Imports Me contiBAIT, derfinder, erma, gQTLBase, gQTLstats, QuasR, Rqc
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicFiles_1.8.0.tar.gz
Windows Binary GenomicFiles_1.8.0.zip
Mac OS X 10.9 (Mavericks) GenomicFiles_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GenomicFiles/tree/release-3.3
Package Short Url http://bioconductor.org/packages/GenomicFiles/
Package Downloads Report Download Stats

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