DOI: 10.18129/B9.bioc.GenomicFiles    

Distributed computing by file or by range

Bioconductor version: Release (3.6)

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Bioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("GenomicFiles")):


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PDF R Script Introduction to GenomicFiles
PDF   Reference Manual
Text   NEWS
Video   Reading from a BAM file - Part 2


biocViews Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 2.14 (R-3.1) (4 years)
License Artistic-2.0
Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), GenomicRanges(>= 1.29.6), SummarizedExperiment, BiocParallel(>= 1.1.0), Rsamtools(>= 1.17.29), rtracklayer(>= 1.25.3)
Imports GenomicAlignments(>= 1.7.7), IRanges, S4Vectors(>= 0.9.25), VariantAnnotation, GenomeInfoDb
Suggests BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
Depends On Me erma
Imports Me contiBAIT, derfinder, gQTLBase, gQTLstats, ldblock, QuasR, Rqc, yriMulti
Suggests Me MultiAssayExperiment
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