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Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (2.14)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):


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biocViews ExperimentData, Homo_sapiens, RNAseqData
Version 0.2.0
License LGPL
Suggests GenomicAlignments, BiocInstaller
System Requirements
Depends On Me RNAseqData.HeLa.bam.chr14
Imports Me RNAseqData.HeLa.bam.chr14
Suggests Me GenomicAlignments, GenomicFiles, roar, Rsamtools, SplicingGraphs

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