roar

This is the released version of roar; for the devel version, see roar.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Identify differential APA usage from RNA-seq alignments

Bioconductor version: Release (3.23)

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")):

Elena Grassi. roar: Identify differential APA usage from RNA-seq alignments. doi:10.18129/B9.bioc.roar, R package version 1.48.0, https://bioconductor.org/packages/roar.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("roar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")

Identify differential APA usage from RNA-seq alignments	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version	1.48.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	GPL-3
Depends	R (>= 3.0.1)
Imports	methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments (>= 0.99.4), rtracklayer, GenomeInfoDb
System Requirements
URL	https://github.com/vodkatad/roar/

Suggests	RNAseqData.HNRNPC.bam.chr14, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	roar_1.48.0.tar.gz
Windows Binary (x86_64)	roar_1.48.0.zip
macOS Binary (big-sur-x86_64)	roar_1.48.0.tgz
macOS Binary (sonoma-arm64)	roar_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/roar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/roar
Package Short Url	https://bioconductor.org/packages/roar/
Package Downloads Report	Download Stats