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Basic graphic utilities for visualization of genomic data.

Bioconductor version: Release (3.1)

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at>

Citation (from within R, enter citation("biovizBase")):


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PDF R Script An Introduction to biovizBase
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, Preprocessing, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 2.9 (R-2.14) (4 years)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, S4Vectors(>= 0.2.4), IRanges(>= 1.99.28), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.17.19), Biostrings(>= 2.33.11), Rsamtools(>= 1.17.28), GenomicAlignments(>= 1.1.16), GenomicFeatures(>= 1.17.13), AnnotationDbi, VariantAnnotation(>= 1.11.4)
Suggests BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
Depends On Me CAFE, qrqc
Imports Me GenoView, ggbio, Gviz, Pviz, qrqc
Suggests Me derfinder, derfinderPlot, R3CPET, regionReport
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Package Source biovizBase_1.16.0.tar.gz
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