trackViewer

light package to plot elegant track layers

Bioconductor version: Development (3.0)

plot ChIP-seq, RNA-seq, miRNA-seq, DNA-seq and etc NGS sequence data, especially for big files.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("trackViewer")

To cite this package in a publication, start R and enter:

    citation("trackViewer")

Documentation

PDF R Script trackViewer Vignette
PDF   Reference Manual

Details

biocViews GenomicsSequence, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 2)
Depends R (>= 3.1.0), methods, GenomicRanges, grid, gWidgetstcltk
Imports GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, scales
Suggests biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source trackViewer_1.1.0.tar.gz
Windows Binary trackViewer_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) trackViewer_1.1.0.tgz
Mac OS X 10.9 (Mavericks)
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