To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annotate")

In most cases, you don't need to download the package archive at all.

annotate

 

   

This is the development version of annotate; for the stable release version, see annotate.

Annotation for microarrays

Bioconductor version: Development (3.4)

Using R enviroments for annotation.

Author: R. Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("annotate")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annotate")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annotate")

 

PDF R Script Annotation Overview
PDF R Script Basic GO Usage
PDF R Script HowTo: Get HTML Output
PDF R Script HowTo: use chromosomal information
PDF R Script HOWTO: Use the online query tools
PDF R Script Using Affymetrix Probe Level Data
PDF R Script Using Data Packages
PDF R Script Using the homology package
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, Pathways, Software
Version 1.51.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.10), AnnotationDbi(>= 1.27.5), XML
Imports Biobase, DBI, xtable, graphics, utils, stats, methods, BiocGenerics(>= 0.13.8)
LinkingTo
Suggests hgu95av2.db, genefilter, Biostrings(>= 2.25.10), rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db, humanCHRLOC, Rgraphviz, RUnit
SystemRequirements
Enhances
URL
Depends On Me ChromHeatMap, GeneAnswers, geneplotter, GOSim, GSEABase, idiogram, macat, MGFM, MineICA, MLInterfaces, Neve2006, PCpheno, phenoTest, PREDA, PREDAsampledata, RpsiXML, ScISI, SemDist
Imports Me CAFE, Category, categoryCompare, codelink, debrowser, DOQTL, DrugVsDisease, facopy, gCMAP, gCMAPWeb, GeneAnswers, genefilter, GlobalAncova, globaltest, GOstats, lumi, methyAnalysis, methylumi, mvGST, phenoTest, qpgraph, ReportingTools, ScISI, splicegear, systemPipeR, tigre
Suggests Me BiocCaseStudies, BiocGenerics, biomaRt, GenomicRanges, GlobalAncova, GOstats, GSAR, GSEAlm, maigesPack, metagenomeSeq, MLP, oneChannelGUI, puma, RnBeads, siggenes, SummarizedExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source annotate_1.51.0.tar.gz
Windows Binary annotate_1.51.0.zip
Mac OS X 10.9 (Mavericks) annotate_1.51.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/annotate
Package Short Url http://bioconductor.org/packages/annotate/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: