ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: Development (3.0)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChromHeatMap")

To cite this package in a publication, start R and enter:

    citation("ChromHeatMap")

Documentation

PDF R Script Plotting expression data with ChromHeatMap
PDF   Reference Manual

Details

biocViews Software, Visualization
Version 1.19.0
In Bioconductor since BioC 2.5 (R-2.10)
License Artistic-2.0
Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer
Suggests ALL, hgu95av2.db
System Requirements
URL
Depends On Me
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Package Downloads

Package Source ChromHeatMap_1.19.0.tar.gz
Windows Binary ChromHeatMap_1.19.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChromHeatMap_1.19.0.tgz
Mac OS X 10.9 (Mavericks)
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