To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

In most cases, you don't need to download the package archive at all.

GOSemSim

 

   

This is the development version of GOSemSim; for the stable release version, see GOSemSim.

GO-terms Semantic Similarity Measures

Bioconductor version: Development (3.4)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Gondii, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Alexey Stukalov and Chuanle Xiao.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("GOSemSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

Documentation

HTML R Script An introduction to GOSemSim
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, GO, Network, Pathways, Software
Version 1.31.2
In Bioconductor since BioC 2.4 (R-2.9) (7 years)
License Artistic-2.0
Depends R (>= 3.2.0)
Imports Rcpp, AnnotationDbi, GO.db, utils
LinkingTo Rcpp
Suggests DOSE, clusterProfiler, org.Hs.eg.db, knitr, BiocStyle, BiocInstaller
SystemRequirements
Enhances
URL http://guangchuangyu.github.io/GOSemSim
BugReports https://github.com/GuangchuangYu/GOSemSim/issues
Depends On Me tRanslatome
Imports Me clusterProfiler, DOSE, Rcpi, ReactomePA
Suggests Me SemDist
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GOSemSim_1.31.2.tar.gz
Windows Binary GOSemSim_1.31.2.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GOSemSim
Package Short Url http://bioconductor.org/packages/GOSemSim/
Package Downloads Report Download Stats

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