To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")

In most cases, you don't need to download the package archive at all.

piano

 

   

This is the development version of piano; for the stable release version, see piano.

Platform for integrative analysis of omics data

Bioconductor version: Development (3.4)

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

Citation (from within R, enter citation("piano")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")

 

PDF Piano - Platform for Integrative Analysis of Omics data
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization
Version 1.13.10
In Bioconductor since BioC 2.12 (R-3.0) (3.5 years)
License GPL (>=2)
Depends R (>= 2.14.0)
Imports BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea
LinkingTo
Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi
SystemRequirements
Enhances
URL http://www.sysbio.se/piano
Depends On Me
Imports Me PharmacoGx, saps
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source piano_1.13.10.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) piano_1.13.10.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/piano
Package Short Url http://bioconductor.org/packages/piano/
Package Downloads Report Download Stats

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