To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("marray")

In most cases, you don't need to download the package archive at all.

marray

 

   

This is the development version of marray; for the stable release version, see marray.

Exploratory analysis for two-color spotted microarray data

Bioconductor version: Development (3.4)

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("marray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

 

PDF marray Normalization
PDF marray Overview
PDF marrayClasses Overview
PDF marrayClasses Tutorial (short)
PDF marrayInput Introduction
PDF marrayPlots Overview
PDF   Reference Manual
Text   LICENSE

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.51.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11.5 years)
License LGPL
Depends R (>= 2.10.0), limma, methods
Imports
LinkingTo
Suggests tkWidgets
SystemRequirements
Enhances
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, FEM, maigesPack, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me arrayQuality, ChAMP, methylPipe, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse
Suggests Me AgiMicroRna, DEGraph, Mfuzz
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source marray_1.51.0.tar.gz
Windows Binary marray_1.51.0.zip
Mac OS X 10.9 (Mavericks) marray_1.51.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/marray
Package Short Url http://bioconductor.org/packages/marray/
Package Downloads Report Download Stats

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