arrayQuality

DOI: 10.18129/B9.bioc.arrayQuality    

This is the development version of arrayQuality; for the stable release version, see arrayQuality.

Assessing array quality on spotted arrays

Bioconductor version: Development (3.8)

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Citation (from within R, enter citation("arrayQuality")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("arrayQuality", version = "devel")

Documentation

PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software, TwoChannel, Visualization
Version 1.59.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License LGPL
Depends R (>= 2.2.0)
Imports graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
LinkingTo
Suggests mclust, MEEBOdata, HEEBOdata
SystemRequirements
Enhances
URL http://arrays.ucsf.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayQuality_1.59.0.tar.gz
Windows Binary arrayQuality_1.59.0.zip
Mac OS X 10.11 (El Capitan) arrayQuality_1.59.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/arrayQuality
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/arrayQuality
Package Short Url http://bioconductor.org/packages/arrayQuality/
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