DOI: 10.18129/B9.bioc.clusterProfiler    

This is the development version of clusterProfiler; for the stable release version, see clusterProfiler.

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: Development (3.7)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Maintainer: Guangchuang Yu <guangchuangyu at>

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biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 3.7.0
In Bioconductor since BioC 2.8 (R-2.13) (7 years)
License Artistic-2.0
Depends R (>= 3.3.1), DOSE(>= 3.3.2)
Imports AnnotationDbi, ggplot2, GO.db, GOSemSim(>= 2.0.0), magrittr, methods, plyr, qvalue, rvcheck, stats, stats4, tidyr, utils
Suggests AnnotationHub, GSEABase, KEGG.db, knitr,, prettydoc, pathview, ReactomePA, testthat, topGO
Depends On Me
Imports Me bioCancer, CEMiTool, DAPAR, debrowser, eegc, esATAC, GDCRNATools, LINC, MAGeCKFlute, miRsponge, MoonlightR, TCGAbiolinksGUI
Suggests Me ChIPseeker, DOSE, enrichplot, GOSemSim, isomiRs, ReactomePA, TCGAbiolinks
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