To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

In most cases, you don't need to download the package archive at all.

ReactomePA

 

This is the development version of ReactomePA; for the stable release version, see ReactomePA.

Reactome Pathway Analysis

Bioconductor version: Development (3.3)

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Vladislav Petyuk

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ReactomePA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomePA")

 

HTML An R package for Reactome Pathway Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 1.15.4
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-2
Depends R (>= 3.2.0), DOSE
Imports AnnotationDbi, reactome.db, igraph, graphite, GOSemSim
LinkingTo
Suggests BiocStyle, clusterProfiler, knitr, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me ChIPseeker, clusterProfiler
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReactomePA_1.15.4.tar.gz
Windows Binary ReactomePA_1.15.4.zip
Mac OS X 10.6 (Snow Leopard) ReactomePA_1.13.4.tgz
Mac OS X 10.9 (Mavericks) ReactomePA_1.15.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ReactomePA
Package Short Url http://bioconductor.org/packages/ReactomePA/
Package Downloads Report Download Stats

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