clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (2.14)

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clusterProfiler")

To cite this package in a publication, start R and enter:

    citation("clusterProfiler")

Documentation

PDF R Script An introduction to clusterProfiler
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, stats4, plyr, AnnotationDbi, GO.db, KEGG.db, DOSE, GOSemSim
Suggests org.Hs.eg.db, ReactomePA, pathview, knitr
System Requirements
URL http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA

Package Downloads

Package Source clusterProfiler_1.12.0.tar.gz
Windows Binary clusterProfiler_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clusterProfiler_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center