DOI: 10.18129/B9.bioc.affycoretools    

This is the development version of affycoretools; for the stable release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: Development (3.8)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at>

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HTML R Script Creating annotated output with \Biocpkg{affycoretools} and ReportingTools
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.53.2
In Bioconductor since BioC 1.8 (R-2.3) (12 years)
License Artistic-2.0
Depends Biobase, methods
Imports affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI
Suggests affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl, rmarkdown
Depends On Me AgiMicroRna
Imports Me
Suggests Me
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Source Package affycoretools_1.53.2.tar.gz
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