To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

In most cases, you don't need to download the package archive at all.

affycoretools

DOI: 10.18129/B9.bioc.affycoretools    

This is the development version of affycoretools; for the stable release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: Development (3.7)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("affycoretools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

Documentation

HTML R Script Creating annotated output with \Biocpkg{affycoretools} and ReportingTools
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.51.3
In Bioconductor since BioC 1.8 (R-2.3) (11.5 years)
License Artistic-2.0
Depends Biobase, methods
Imports affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI
LinkingTo
Suggests affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me AgiMicroRna
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affycoretools_1.51.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) affycoretools_1.51.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/affycoretools
Package Short Url http://bioconductor.org/packages/affycoretools/
Package Downloads Report Download Stats

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