To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affycoretools")

In most cases, you don't need to download the package archive at all.

affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Release (3.0)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("affycoretools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affycoretools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycoretools")

 

PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF R Script affycoretools, refactored
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.38.0
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends affy, Biobase, GO.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, oligoClasses, ReportingTools, hwriter
Suggests affydata, hgfocuscdf, rgl, BiocStyle, knitr
System Requirements
URL
Depends On Me AgiMicroRna
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affycoretools_1.38.0.tar.gz
Windows Binary affycoretools_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affycoretools_1.38.0.tgz
Mac OS X 10.9 (Mavericks) affycoretools_1.38.0.tgz
Browse/checkout source (username/password: readonly)
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