To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

In most cases, you don't need to download the package archive at all.

oligoClasses

 

   

This is the development version of oligoClasses; for the stable release version, see oligoClasses.

Classes for high-throughput arrays supported by oligo and crlmm

Bioconductor version: Development (3.4)

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho and Robert Scharpf

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("oligoClasses")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.35.0
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License GPL (>= 2)
Depends R (>= 2.14)
Imports BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), ff, foreach, BiocInstaller, utils, S4Vectors(>= 0.9.25), RSQLite
LinkingTo
Suggests hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, SNPchip, VanillaICE, crlmm
SystemRequirements
Enhances doMC, doMPI, doSNOW, doParallel, doRedis
URL
Depends On Me cn.farms, crlmm, mBPCR, oligo, pd.atdschip.tiling, puma, waveTiling
Imports Me affycoretools, ArrayTV, charm, frma, ITALICS, MinimumDistance, pdInfoBuilder, puma, SNPchip, VanillaICE
Suggests Me BiocGenerics, CNPBayes, hapmapsnp6
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source oligoClasses_1.35.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) oligoClasses_1.35.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/oligoClasses
Package Short Url http://bioconductor.org/packages/oligoClasses/
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