Investigates allele specific expression

Bioconductor version: Development (3.0)

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at>

To install this package, start R and enter:


Citation (from within R, enter citation("AllelicImbalance")):


PDF R Script AllelicImbalance
PDF   Reference Manual
Text   NEWS


biocViews Genetics, Infrastructure, Sequencing, Software
Version 1.3.5
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0.0), BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, GenomicAlignments
Imports methods, AnnotationDbi, Biostrings, Rsamtools, GenomicFeatures
Suggests RUnit,, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source AllelicImbalance_1.3.5.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AllelicImbalance_1.3.5.tgz
Mac OS X 10.9 (Mavericks) AllelicImbalance_1.3.5.tgz
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