DOI: 10.18129/B9.bioc.TCGAutils    

This is the development version of TCGAutils; to use it, please install the devel version of Bioconductor.

TCGA utility functions for data management

Bioconductor version: Development (3.10)

A suite of helper functions for checking and manipulating TCGA data including data obtained from the curatedTCGAData experiment package. These functions aim to simplify and make working with TCGA data more manageable.

Author: Marcel Ramos [aut, cre], Lucas Schiffer [aut], Sean Davis [ctb], Levi Waldron [aut]

Maintainer: Marcel Ramos <marcel.ramos at>

Citation (from within R, enter citation("TCGAutils")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Preprocessing, Software, WorkflowStep
Version 1.5.0
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports AnnotationDbi, BiocGenerics, GenomeInfoDb, GenomicFeatures, GenomicRanges, GenomicDataCommons, IRanges, methods, MultiAssayExperiment, RaggedExperiment(>= 1.5.7), rvest, S4Vectors, stats, stringr, SummarizedExperiment, utils, xml2
Suggests BiocFileCache, BiocStyle, curatedTCGAData, devtools, dplyr, IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr, magrittr, minfi, mirbase.db,, readr, RTCGAToolbox(>= 2.7.5), rtracklayer, R.utils, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Depends On Me
Imports Me RTCGAToolbox
Suggests Me CNVRanger, curatedTCGAData, glmSparseNet
Links To Me
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Source Package TCGAutils_1.5.0.tar.gz
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Mac OS X 10.11 (El Capitan) TCGAutils_1.5.0.tgz
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