GenomicDataCommons

DOI: 10.18129/B9.bioc.GenomicDataCommons    

This is the development version of GenomicDataCommons; for the stable release version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: Development (3.8)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Davis Sean [aut, cre]

Maintainer: Davis Sean <sdavis2 at mail.nih.gov>

Citation (from within R, enter citation("GenomicDataCommons")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("GenomicDataCommons", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDataCommons")

 

HTML R Script Introduction to Accessing the NCI Genomic Data Commons
PDF   Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.5.4
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License Artistic-2.0
Depends R (>= 3.4.0), magrittr
Imports stats, httr, xml2, jsonlite, utils, lazyeval, readr, GenomicRanges, IRanges, dplyr, rappdirs, SummarizedExperiment, S4Vectors
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons
BugReports https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me GDCRNATools, TCGAutils
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDataCommons_1.5.4.tar.gz
Windows Binary GenomicDataCommons_1.5.4.zip
Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.5.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicDataCommons
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDataCommons
Package Short Url http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report Download Stats

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