To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiAssayExperiment")

In most cases, you don't need to download the package archive at all.

MultiAssayExperiment

DOI: 10.18129/B9.bioc.MultiAssayExperiment    

This is the development version of MultiAssayExperiment; for the stable release version, see MultiAssayExperiment.

Software for the integration of multi-omics experiments in Bioconductor

Bioconductor version: Development (3.6)

Multi-assay 'omics experiments on a set of samples are increasingly commonplace in biomedical research. MultiAssayExperiment implements data structures and methods for representing, manipulating, and integrating multi-assay experiments via efficient construction, subsetting, and extraction operations. These methods are implemented matching Bioconductor user experience by straightforward extending concept and design of single-assay classes such as SummarizedExperiment or ExpressionSet.

Author: Marcel Ramos [aut, cre], Levi Waldron [aut], MultiAssay SIG [ctb]

Maintainer: Marcel Ramos <marcel.ramosperez at roswellpark.org>

Citation (from within R, enter citation("MultiAssayExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiAssayExperiment")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiAssayExperiment")

 

PDF MultiAssayExperiment_cheatsheet.pdf
HTML R Script Coordinating Analysis of Multi-Assay Experiments
HTML R Script HDF5Array and MultiAssayExperiment
HTML R Script MultiAssayExperiment: Prostate Cancer Data
HTML R Script Quick-start Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.3.41
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports methods, GenomicRanges(>= 1.25.93), BiocGenerics, SummarizedExperiment(>= 1.3.81), S4Vectors, IRanges, Biobase, reshape2, shinydashboard, shiny, stats, tidyr, utils
LinkingTo
Suggests BiocStyle, testthat, knitr, R.rsp, GenomicFiles, HDF5Array, RaggedExperiment, rmarkdown, UpSetR, survival, survminer
SystemRequirements
Enhances
URL https://github.com/waldronlab/MultiAssayExperiment/wiki/MultiAssayExperiment-API
BugReports https://github.com/waldronlab/MultiAssayExperiment/issues
Depends On Me yriMulti
Imports Me ELMER, GOpro
Suggests Me MultiDataSet, RaggedExperiment, RTCGAToolbox
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiAssayExperiment_1.3.41.tar.gz
Windows Binary MultiAssayExperiment_1.3.41.zip
Mac OS X 10.11 (El Capitan) MultiAssayExperiment_1.3.41.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiAssayExperiment
Package Short Url http://bioconductor.org/packages/MultiAssayExperiment/
Package Downloads Report Download Stats

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