To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

In most cases, you don't need to download the package archive at all.

ComplexHeatmap

 

   

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: Development (3.5)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

Documentation

HTML R Script 1. Introduction to ComplexHeatmap package
HTML R Script 2. Making a single heatmap
HTML R Script 3. Making a list of Heatmaps
HTML R Script 4. Heatmap Annotations
HTML R Script 5. Heatmap and Annotation Legends
HTML R Script 6. Heatmap Decoration
HTML R Script 7. Interactive with Heatmaps
HTML R Script 8. OncoPrint
HTML R Script 9. More Examples
PDF   Reference Manual
Text   NEWS

Details

biocViews Sequencing, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License GPL (>= 2)
Depends R (>= 3.1.2), grid, graphics, stats, grDevices
Imports methods, circlize (>= 0.3.4), GetoptLong, colorspace, RColorBrewer, dendextend (>= 1.0.1), GlobalOptions (>= 0.0.10)
LinkingTo
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster
SystemRequirements
Enhances
URL https://github.com/jokergoo/ComplexHeatmap
Depends On Me EnrichedHeatmap, recoup
Imports Me EnrichmentBrowser, fCCAC, TCGAbiolinks, YAPSA
Suggests Me gtrellis, HilbertCurve
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ComplexHeatmap_1.13.0.tar.gz
Windows Binary ComplexHeatmap_1.13.0.zip
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ComplexHeatmap
Package Short Url http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats

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