To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

In most cases, you don't need to download the package archive at all.

ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap    

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: Development (3.7)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

Documentation

HTML R Script 1. Introduction to ComplexHeatmap package
HTML R Script 2. Making a single heatmap
HTML R Script 3. Making a list of Heatmaps
HTML R Script 4. Heatmap Annotations
HTML R Script 5. Heatmap and Annotation Legends
HTML R Script 6. Heatmap Decoration
HTML R Script 7. Interactive with Heatmaps
HTML R Script 8. OncoPrint
HTML R Script 9. More Examples
PDF   Reference Manual
Text   NEWS

Details

biocViews Sequencing, Software, Visualization
Version 1.17.1
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10)
LinkingTo
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
SystemRequirements
Enhances
URL https://github.com/jokergoo/ComplexHeatmap
Depends On Me EnrichedHeatmap, recoup
Imports Me DEGreport, DEP, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, maftools, MWASTools, TCGAbiolinks, YAPSA
Suggests Me gtrellis, HilbertCurve
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_1.17.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ComplexHeatmap_1.17.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap
Package Short Url http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats

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