ComplexHeatmap
Make Complex Heatmaps
Bioconductor version: 3.24 · Package version: 2.29.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")Details
| Maintainer | Zuguang Gu <guzuguang@suat-sz.edu.cn> |
| Author | Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/ |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Sequencing, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
Citation
From within R, enter citation("ComplexHeatmap"):
Zuguang Gu. ComplexHeatmap: Make Complex Heatmaps. doi:10.18129/B9.bioc.ComplexHeatmap, R package version 2.29.0, https://bioconductor.org/packages/ComplexHeatmap.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ComplexHeatmap_2.29.0.tar.gz |
| Windows binary (x86_64) | ComplexHeatmap_2.29.0.zip |
| macOS binary (arm64) | ComplexHeatmap_2.29.0.tgz |
| macOS binary (x86_64) | ComplexHeatmap_2.29.0.tgz |
Dependencies
Depends: R (>= 4.0.0), methods, grid, graphics, stats, grDevices
Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools
Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick
Reverse dependencies
Depends On Me (6): AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, multistateQTL, recoup, sechm
Imports Me (136): airpart, ASURAT, autoGO, barbieQ, bettr, BindingSiteFinder, BioNERO, blacksheepr, blisa, BloodGen3Module, BreastSubtypeR, BulkSignalR, CATALYST, CCPlotR, celda, cellGeometry, CellWindX, CeTF, chevreulPlot, chevreulShiny, CLAMP, ClustAll, COCOA, coda4microbiome, cola, conos, COTAN, CRISPRball, CTexploreR, CySA, cytoKernel, damidBind, Damsel, dar, DEGreport, DeSciDe, diffcyt, diffUTR, dinoR, dominoSignal, ELMER, ELViS, EMTscore, epiregulon.extra, fCCAC, FLAMES, GAPR, gCrisprTools, GeDi, GeneTonic, GenomicPlot, GenomicSuperSignature, geyser, gINTomics, gmoviz, goatea, GRaNIE, GSEAlens, GSSTDA, gVenn, hermes, hoodscanR, HybridExpress, iModMix, InterCellar, iSEE, karyotapR, MAPFX, markeR, MatrixQCvis, MesKit, MetaHD, mineSweepR, missoNet, MitoHEAR, mitology, MKomics, MOMA, monaLisa, Moonlight2R, MOSClip, MPAC, MultiRNAflow, muscat, musicatk, MWASTools, nipalsMCIA, ogrdbstats, Path.Analysis, pathlinkR, PathoStat, PCAPAM50, PeacoQC, pipeComp, pkgndep, polyICSFlow, POMA, profileplyr, PRONE, quantMSImageR, rCISSVAE, RepeatedHighDim, RFLOMICS, RiboCrypt, rKOMICS, RNAseqQC, RNAshapeQC, RnBeads, RUCova, scafari, scRNAseqApp, segmenter, shinyDSP, signifinder, simona, simplifyEnrichment, SingleCellComplexHeatMap, SingleCellSignalR, singleCellTK, sparrow, spatialGE, spatialLIBD, spiralize, SPONGE, StatescopeR, TBSignatureProfiler, thisplot, TiDEomics, tidyHeatmap, TMSig, TransProR, ViSEAGO, visxhclust, wilson, Xeva, YAPSA
Suggests Me (68): artMS, bambu, BeeBDC, bifrost, Canton, celliverse, CIARA, circlize, circlizePlus, ClustAssess, ClusterGVis, clustifyr, CNVRanger, CNVScope, CONCERTDR, ConsensusOPLS, Coralysis, curatedPCaData, demuxSNP, DiffBind, diffHTS, dittoSeq, EnrichmentBrowser, fishash, FlowSOM, ggbond, ggpicrust2, glydraw, grandR, GRIN2, gtrellis, HilbertCurve, inferCSN, IOBR, LegATo, mastR, metasnf, miaViz, msImpute, msqrob2, multipanelfigure, NanoporeRNASeq, pepdiff, piglet, plotgardener, plotthis, projectR, ProteinGymR, QFeatures, raer, rliger, scCustomize, scDblFinder, scDiagnostics, scLANE, SCpubr, SeuratExplorer, sfcurve, singleCellHaystack, SpaceMarkers, SPIAT, SRscore, TCGAbiolinks, TCGAutils, tinyarray, VISTA, VizModules, weitrix