DOI: 10.18129/B9.bioc.MetaboSignal    

This is the development version of MetaboSignal; for the stable release version, see MetaboSignal.

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Bioconductor version: Development (3.7)

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

Author: Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas

Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at>, Rafael Ayala <r.ayala14 at>

Citation (from within R, enter citation("MetaboSignal")):


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HTML R Script MetaboSignal
HTML R Script MetaboSignal 2: merging KEGG with additional interaction resources
PDF   Reference Manual
Text   NEWS


biocViews GeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software
Version 1.9.0
In Bioconductor since BioC 3.4 (R-3.3) (1.5 years)
License GPL-3
Depends R (>= 3.3)
Imports KEGGgraph, hpar, igraph, RCurl, KEGGREST, EnsDb.Hsapiens.v75, stats, graphics, utils,, biomaRt, AnnotationDbi, MWASTools, mygene
Suggests RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
Depends On Me
Imports Me
Suggests Me
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