To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

In most cases, you don't need to download the package archive at all.

AnnotationForge

 

   

This is the development version of AnnotationForge; for the stable release version, see AnnotationForge.

Code for Building Annotation Database Packages

Bioconductor version: Development (3.3)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

 

PDF AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF Creating probe packages
PDF SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML Making New Organism Packages
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.13.16
In Bioconductor since BioC 2.11 (R-2.15) (3.5 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.33.14)
Imports DBI, RSQLite, XML, S4Vectors
LinkingTo
Suggests RCurl, biomaRt, httr, GenomeInfoDb, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db, RSQLite, XML, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats
Suggests Me AnnotationDbi, AnnotationHub
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationForge_1.13.16.tar.gz
Windows Binary AnnotationForge_1.13.16.zip
Mac OS X 10.6 (Snow Leopard) AnnotationForge_1.11.19.tgz
Mac OS X 10.9 (Mavericks) AnnotationForge_1.13.16.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AnnotationForge
Package Short Url http://bioconductor.org/packages/AnnotationForge/
Package Downloads Report Download Stats

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