DOI: 10.18129/B9.bioc.bumphunter    

This is the development version of bumphunter; for the stable release version, see bumphunter.

Bump Hunter

Bioconductor version: Development (3.7)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry [cre, aut], Martin Aryee [aut], Kasper Daniel Hansen [aut], Hector Corrada Bravo [aut], Shan Andrews [ctb], Andrew E. Jaffe [ctb], Harris Jaffee [ctb], Leonardo Collado-Torres [ctb]

Maintainer: Rafael A. Irizarry <rafa at jimmy.harvard.edu>

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PDF R Script The bumphunter user's guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Epigenetics, Infrastructure, MultipleComparison, Software
Version 1.21.0
In Bioconductor since BioC 2.12 (R-3.0) (5 years)
License Artistic-2.0
Depends R (>= 3.4), S4Vectors(>= 0.9.25), IRanges(>= 2.3.23), GenomeInfoDb, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports matrixStats, limma, doRNG, BiocGenerics, utils, GenomicFeatures, AnnotationDbi, stats
Suggests testthat, RUnit, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
URL https://github.com/ririzarr/bumphunter
Depends On Me minfi
Imports Me ChAMP, derfinder, dmrseq, methyvim, recountWorkflow
Suggests Me derfinderPlot, epivizrData, regionReport
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Source Package bumphunter_1.21.0.tar.gz
Windows Binary bumphunter_1.21.0.zip
Mac OS X 10.11 (El Capitan) bumphunter_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bumphunter
Package Short Url http://bioconductor.org/packages/bumphunter/
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