Gene set enrichment for ChIP-seq peak data

Bioconductor version: Development (3.0)

ChIP-Enrich performs gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.

Author: Ryan P. Welch [aut, cre, cph], Chee Lee [ctb], Laura J. Scott [ths], Maureen A. Sartor [ths]

Maintainer: Ryan P. Welch <welchr at>

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PDF R Script ChIP-Enrich Vignette/Tutorial
PDF   Reference Manual
Text   NEWS


biocViews GeneSetEnrichment, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 2.15.1)
Imports, methods, GenomicRanges(>= 1.10.0), IRanges(>= 1.16.0), mgcv, plyr (>= 1.7.0), lattice, latticeExtra, grid, stringr (>= 0.6), reshape
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Package Source chipenrich_1.3.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chipenrich_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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