To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")

In most cases, you don't need to download the package archive at all.

proBAMr

DOI: 10.18129/B9.bioc.proBAMr    

This is the development version of proBAMr; for the stable release version, see proBAMr.

Generating SAM file for PSMs in shotgun proteomics data

Bioconductor version: Development (3.7)

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("proBAMr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")

 

PDF R Script Introduction to proBAMr
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License Artistic-2.0
Depends R (>= 3.0.1), IRanges, AnnotationDbi
Imports GenomicRanges, Biostrings, GenomicFeatures, rtracklayer
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proBAMr_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) proBAMr_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/proBAMr
Package Short Url http://bioconductor.org/packages/proBAMr/
Package Downloads Report Download Stats

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