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proBAMr

This is the released version of proBAMr; for the devel version, see proBAMr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Generating SAM file for PSMs in shotgun proteomics data

DOI: 10.18129/B9.bioc.proBAMr

Bioconductor version: Release (3.23)

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("proBAMr")):

Xiaojing Wang. proBAMr: Generating SAM file for PSMs in shotgun proteomics data. doi:10.18129/B9.bioc.proBAMr, R package version 1.46.0, https://bioconductor.org/packages/proBAMr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proBAMr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")

Details

Package Archives

Follow Installation instructions to use this package in your R session.