To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

In most cases, you don't need to download the package archive at all.

graphite

 

   

This is the development version of graphite; for the stable release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: Development (3.5)

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

 

PDF R Script GRAPH Interaction from pathway Topological Environment
PDF   Reference Manual
Text   NEWS

Details

biocViews BioCarta, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software, ThirdPartyClient
Version 1.21.0
In Bioconductor since BioC 2.9 (R-2.14) (5 years)
License AGPL-3
Depends R (>= 2.10), methods
Imports AnnotationDbi, graph, stats, utils, rappdirs
LinkingTo
Suggests BiocStyle, hgu133plus2.db, org.Hs.eg.db, SPIA(>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL, testthat
SystemRequirements
Enhances DEGraph, RCytoscape, RCy3
URL
Depends On Me ToPASeq
Imports Me facopy, mogsa, ReactomePA
Suggests Me clipper
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graphite_1.21.0.tar.gz
Windows Binary graphite_1.21.0.zip
Mac OS X 10.9 (Mavericks) graphite_1.21.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/graphite
Package Short Url http://bioconductor.org/packages/graphite/
Package Downloads Report Download Stats

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