graphite

GRAPH Interaction from pathway Topological Environment

Bioconductor version: Development (3.0)

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graphite")

To cite this package in a publication, start R and enter:

    citation("graphite")

Documentation

PDF R Script GRAPH Interaction from pathway Topological Environment
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GraphAndNetwork, Pathways, Software, ThirdPartyClient
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License AGPL-3
Depends R (>= 2.10)
Imports AnnotationDbi, graph, graphics, methods, org.Hs.eg.db, stats, utils
Suggests BiocStyle, DEGraph(>= 1.4), hgu133plus2.db, RCytoscape(>= 1.6), SPIA(>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL
System Requirements
URL
Depends On Me
Imports Me ReactomePA
Suggests Me clipper

Package Downloads

Package Source graphite_1.11.0.tar.gz
Windows Binary graphite_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) graphite_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
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