rGREAT

DOI: 10.18129/B9.bioc.rGREAT    

This is the development version of rGREAT; for the stable release version, see rGREAT.

Client for GREAT Analysis

Bioconductor version: Development (3.8)

This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("rGREAT")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rGREAT", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rGREAT")

 

HTML R Script Analyze with GREAT
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Coverage, GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome
Version 1.13.3
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), GenomicRanges, IRanges, methods
Imports rjson, GetoptLong (>= 0.0.9), RCurl, utils, stats
LinkingTo
Suggests testthat (>= 0.3), knitr, circlize
SystemRequirements
Enhances
URL https://github.com/jokergoo/rGREAT http://great.stanford.edu/public/html/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rGREAT_1.13.3.tar.gz
Windows Binary rGREAT_1.13.3.zip
Mac OS X 10.11 (El Capitan) rGREAT_1.13.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/rGREAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rGREAT
Package Short Url http://bioconductor.org/packages/rGREAT/
Package Downloads Report Download Stats

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