- Home
- Bioconductor 3.6
- Software Packages
- rGREAT (development version)
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
In most cases, you don't need to download the package archive at all.
rGREAT
|
|
|
|
|
|
|
|
This is the development version of rGREAT; for the stable release version, see rGREAT.
Client for GREAT Analysis
Bioconductor version: Development (3.6)
This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("rGREAT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
Documentation
| HTML | R Script | Analyze with GREAT |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), GenomicRanges, IRanges, methods |
| Imports | rjson, GetoptLong (>= 0.0.9), RCurl, utils |
| LinkingTo | |
| Suggests | testthat (>= 0.3), knitr, circlize |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/rGREAT |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rGREAT_1.9.0.tar.gz |
| Windows Binary | rGREAT_1.9.0.zip |
| Mac OS X 10.11 (El Capitan) | rGREAT_1.9.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rGREAT |
| Package Short Url | http://bioconductor.org/packages/rGREAT/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
