scTensor
This is the development version of scTensor; for the stable release version, see scTensor.
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Bioconductor version: Development (3.19)
The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.
Author: Koki Tsuyuzaki [aut, cre], Kozo Nishida [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("scTensor")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scTensor")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DimensionReduction, GeneExpression, SingleCell, Software |
| Version | 2.13.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | methods, RSQLite, igraph, S4Vectors, plotly, reactome.db, AnnotationDbi, SummarizedExperiment, SingleCellExperiment, nnTensor (>= 1.1.5), ccTensor (>= 1.0.2), rTensor (>= 1.4.8), abind, plotrix, heatmaply, tagcloud, rmarkdown, BiocStyle, knitr, AnnotationHub, MeSHDbi(>= 1.29.2), grDevices, graphics, stats, utils, outliers, Category, meshr(>= 1.99.1), GOstats, ReactomePA, DOSE, crayon, checkmate, BiocManager, visNetwork, schex, ggplot2 |
| System Requirements | |
| URL |
See More
| Suggests | testthat, LRBaseDbi, Seurat, scTGIF, Homo.sapiens, AnnotationHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scTensor |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTensor |
| Package Short Url | https://bioconductor.org/packages/scTensor/ |
| Package Downloads Report | Download Stats |