To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TEQC")

In most cases, you don't need to download the package archive at all.

TEQC

 

Quality control for target capture experiments

Bioconductor version: Release (3.1)

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Manuela Hummel <m.hummel at dkfz.de>

Citation (from within R, enter citation("TEQC")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TEQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TEQC")

 

PDF R Script TEQC
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Microarray, QualityControl, Sequencing, Software
Version 3.8.0
In Bioconductor since BioC 2.8 (R-2.13) (4 years)
License GPL (>= 2)
Depends methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Rsamtools, hwriter
Imports Biobase(>= 2.15.1)
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TEQC_3.8.0.tar.gz
Windows Binary TEQC_3.8.0.zip
Mac OS X 10.6 (Snow Leopard) TEQC_3.8.0.tgz
Mac OS X 10.9 (Mavericks) TEQC_3.8.0.tgz
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