ACME

Algorithms for Calculating Microarray Enrichment (ACME)

Bioconductor version: Release (2.14)

ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ACME")

To cite this package in a publication, start R and enter:

    citation("ACME")

Documentation

PDF R Script ACME
PDF   Reference Manual

Details

biocViews Microarray, Normalization, Software, Technology
Version 2.20.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL (>= 2)
Depends R (>= 2.10), Biobase(>= 2.5.5), methods
Imports graphics, stats
Suggests
System Requirements
URL http://watson.nci.nih.gov/~sdavis
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ACME_2.20.0.tar.gz
Windows Binary ACME_2.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ACME_2.20.0.tgz
Mac OS X 10.9 (Mavericks)
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