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oligo

This is the released version of oligo; for the devel version, see oligo.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Preprocessing tools for oligonucleotide arrays

DOI: 10.18129/B9.bioc.oligo

Bioconductor version: Release (3.23)

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Author: Benilton Carvalho and Rafael Irizarry

Maintainer: Benilton Carvalho <benilton at unicamp.br>

Citation (from within R, enter citation("oligo")):

Benilton Carvalho and Rafael Irizarry. oligo: Preprocessing tools for oligonucleotide arrays. doi:10.18129/B9.bioc.oligo, R package version 1.76.0, https://bioconductor.org/packages/oligo.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oligo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oligo")

Details

Package Archives

Follow Installation instructions to use this package in your R session.