To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cn.farms")

In most cases, you don't need to download the package archive at all.

cn.farms

cn.farms - factor analysis for copy number estimation

Bioconductor version: Release (2.14)

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>

To install this package, start R and enter:

Citation (from within R, enter citation("cn.farms")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("cn.farms")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cn.farms")

 

PDF R Script cn.farms: Manual for the R package
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License LGPL (>= 2.0)
Depends R (>= 2.11), Biobase, methods, ff, oligoClasses, snow
Imports BiocGenerics, DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Suggests pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
System Requirements
URL http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cn.farms_1.12.0.tar.gz
Windows Binary cn.farms_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) cn.farms_1.12.0.tgz
Mac OS X 10.9 (Mavericks) cn.farms_1.12.0.tgz
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