frma

Frozen RMA and Barcode

Bioconductor version: Release (2.14)

Preprocessing and analysis for single microarrays and microarray batches.

Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>, with contributions from Terry Therneau

Maintainer: Matthew N. McCall <mccallm at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("frma")

To cite this package in a publication, start R and enter:

    citation("frma")

Documentation

PDF R Script frma: Preprocessing for single arrays and array batches
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software
Version 1.16.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL (>= 2)
Depends R (>= 2.10.0), Biobase(>= 2.6.0)
Imports Biobase, MASS, DBI, affy, methods, oligo, oligoClasses, preprocessCore, utils, BiocGenerics
Suggests hgu133afrmavecs, frmaExampleData
System Requirements
URL http://bioconductor.org
Depends On Me
Imports Me ChIPXpress, DeSousa2013
Suggests Me antiProfilesData, frmaTools

Package Downloads

Package Source frma_1.16.0.tar.gz
Windows Binary frma_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) frma_1.16.0.tgz
Mac OS X 10.9 (Mavericks)
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