To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affxparser")

In most cases, you don't need to download the package archive at all.

affxparser

Affymetrix File Parsing SDK

Bioconductor version: Release (2.14)

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Martin Morgan [ctb]

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("affxparser")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affxparser")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affxparser")

 

PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.36.0
In Bioconductor since BioC 1.7 (R-2.2)
License LGPL (>= 2)
Depends R (>= 2.6.0)
Imports
Suggests R.utils (>= 1.29.8), AffymetrixDataTestFiles
System Requirements
URL
Depends On Me ITALICS, pdInfoBuilder, rMAT, Starr
Imports Me affyILM, AffyTiling, cn.farms, GeneRegionScan, ITALICS, oligo, rMAT
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affxparser_1.36.0.tar.gz
Windows Binary affxparser_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affxparser_1.36.0.tgz
Mac OS X 10.9 (Mavericks) affxparser_1.36.0.tgz
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