affxparser
This is the released version of affxparser; for the devel version, see affxparser.
All Bioconductor versions of affxparser
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Affymetrix File Parsing SDK
Bioconductor version: 3.23 · Package version: 1.84.0
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation
From within R, enter citation("affxparser"):
Henrik Bengtsson, James Bullard, Kasper Daniel Hansen. affxparser: Affymetrix File Parsing SDK. doi:10.18129/B9.bioc.affxparser, R package version 1.84.0, https://bioconductor.org/packages/affxparser.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affxparser")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.84.0 |
| License | LGPL (>= 2) |
| URL | https://github.com/HenrikBengtsson/affxparser |
| Bug Reports | https://github.com/HenrikBengtsson/affxparser/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 163 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software |
| Package Short Url | https://bioconductor.org/packages/affxparser/ |
Documentation
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | affxparser_1.84.0.tar.gz |
| Windows binary (x86_64) | affxparser_1.84.0.zip |
| macOS binary (arm64) | affxparser_1.84.0.tgz |
| macOS binary (x86_64) | affxparser_1.84.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affxparser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affxparser |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.14.0)
Suggests: R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles
Reverse dependencies
Depends On Me (2): ITALICS, pdInfoBuilder
Imports Me (6): affyILM, cn.farms, EventPointer, GeneRegionScan, ITALICS, oligo
Suggests Me (3): aroma.affymetrix, aroma.apd, TIN