Heatplus

Heatmaps with row and/or column covariates and colored clusters

Bioconductor version: Release (2.14)

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Heatplus")

To cite this package in a publication, start R and enter:

    citation("Heatplus")

Documentation

PDF R Script Annotated and regular heatmaps
PDF R Script Commented package source
PDF R Script Old functions (deprecated)
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, Software, Visualization
Version 2.10.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL (>= 2)
Depends
Imports graphics, grDevices, stats
Suggests Biobase, hgu95av2.db, limma
System Requirements
URL
Depends On Me phenoTest, tRanslatome
Imports Me GeneAnswers
Suggests Me

Package Downloads

Package Source Heatplus_2.10.0.tar.gz
Windows Binary Heatplus_2.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Heatplus_2.10.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center