bioCancer
This is the released version of bioCancer; for the devel version, see bioCancer.
All Bioconductor versions of bioCancer
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
Interactive Multi-Omics Cancers Data Visualization and Analysis
Bioconductor version: 3.23 · Package version: 1.40.0
This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.
Author: Karim Mezhoud [aut, cre]
Maintainer: Karim Mezhoud <kmezhoud at gmail.com>
Citation
From within R, enter citation("bioCancer"):
Karim Mezhoud. bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis. doi:10.18129/B9.bioc.bioCancer, R package version 1.40.0, https://bioconductor.org/packages/bioCancer.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bioCancer")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.40.0 |
| License | AGPL-3 | file LICENSE |
| URL | https://kmezhoud.github.io/bioCancer/ |
| Bug Reports | https://github.com/kmezhoud/bioCancer/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 601 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/bioCancer/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bioCancer")| bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | bioCancer_1.40.0.tar.gz |
| Windows binary (x86_64) | bioCancer_1.40.0.zip |
| macOS binary (arm64) | bioCancer_1.40.0.tgz |
| macOS binary (x86_64) | bioCancer_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bioCancer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bioCancer |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1.0), radiant.data (>= 0.9.1), cBioPortalData, XML (>= 3.98)
Imports: R.oo, R.methodsS3, DT (>= 0.3), dplyr (>= 0.7.2), tidyr, shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db
Suggests: BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)