leeBamViews

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: Release (2.14)

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("leeBamViews")

To cite this package in a publication, start R and enter:

    citation("leeBamViews")

Documentation

PDF R Script managing multiple NGS samples with bamViews
PDF   Reference Manual

Details

biocViews CellBiology, DifferentialExpression, ExperimentData, Genetics, HighThroughputSequencing, RNAseq, RNAseqData
Version 1.0.0
License Artistic 2.0
Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, GenomicAlignments, methods
Suggests GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR
System Requirements
URL
Depends On Me
Imports Me
Suggests Me EDASeq

Package Downloads

Package Source leeBamViews_1.0.0.tar.gz
Windows Binary leeBamViews_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) leeBamViews_1.0.0.tgz
Mac OS X 10.9 (Mavericks) leeBamViews_1.0.0.tgz
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