openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Release (2.14)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

Citation (from within R, enter citation("openCyto")):

Documentation

HTML R Script An Introduction to the openCyto package
HTML R Script How to write a csv gating template
PDF   Reference Manual

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.2.11
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends methods, flowWorkspace
Imports Biobase, gtools, flowCore, flowViz, flowStats, flowClust, MASS, clue, plyr, RBGL, Rgraphviz, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
Suggests flowWorkspaceData, knitr, testthat, utils, tools
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source openCyto_1.2.11.tar.gz
Windows Binary openCyto_1.2.11.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) openCyto_1.2.11.tgz
Mac OS X 10.9 (Mavericks) openCyto_1.2.11.tgz
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