Cardinal

DOI: 10.18129/B9.bioc.Cardinal    

A mass spectrometry imaging toolbox for statistical analysis

Bioconductor version: Release (3.8)

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("Cardinal")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Cardinal", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cardinal")

 

PDF R Script Cardinal 2.0: User's Guide
PDF R Script Cardinal design and development
PDF R Script Cardinal: Analytic tools for mass spectrometry imaging
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, ImagingMassSpectrometry Clustering, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software
Version 2.0.1
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends BiocGenerics, BiocParallel, EBImage, graphics, methods, S4Vectors, stats, ProtGenerics
Imports Biobase, dplyr, grid, irlba, lattice, magrittr, matter, signal, sp, stats4, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL http://www.cardinalmsi.org
Depends On Me CardinalWorkflows
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Cardinal_2.0.1.tar.gz
Windows Binary Cardinal_2.0.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Cardinal_2.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Cardinal
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Cardinal
Package Short Url http://bioconductor.org/packages/Cardinal/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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