Cardinal

DOI: 10.18129/B9.bioc.Cardinal    

A mass spectrometry imaging toolbox for statistical analysis

Bioconductor version: Release (3.8)

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("Cardinal")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Cardinal", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cardinal")

 

PDF R Script Cardinal 2.0: User's Guide
PDF R Script Cardinal design and development
PDF R Script Cardinal: Analytic tools for mass spectrometry imaging
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, ImagingMassSpectrometry, ImmunoOncology, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software
Version 2.0.4
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License Artistic-2.0
Depends BiocGenerics, BiocParallel, EBImage, graphics, methods, S4Vectors, stats, ProtGenerics
Imports Biobase, dplyr, grid, irlba, lattice, magrittr, matter, signal, sp, stats4, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL http://www.cardinalmsi.org
Depends On Me CardinalWorkflows
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Cardinal_2.0.4.tar.gz
Windows Binary Cardinal_2.0.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Cardinal_2.0.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/Cardinal
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Cardinal
Package Short Url http://bioconductor.org/packages/Cardinal/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: