To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")

In most cases, you don't need to download the package archive at all.

Cardinal

DOI: 10.18129/B9.bioc.Cardinal    

This is the development version of Cardinal; for the stable release version, see Cardinal.

A mass spectrometry imaging toolbox for statistical analysis

Bioconductor version: Development (3.7)

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("Cardinal")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cardinal")

 

PDF R Script Cardinal design and development
PDF R Script Cardinal: Analytic tools for mass spectrometry imaging
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, ImagingMassSpectrometry, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software
Version 1.11.2
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License Artistic-2.0
Depends BiocGenerics, Biobase, graphics, matter, methods, stats, ProtGenerics
Imports grDevices, grid, irlba, lattice, signal, sp, stats4, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL http://www.cardinalmsi.org
Depends On Me CardinalWorkflows
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Cardinal_1.11.2.tar.gz
Windows Binary Cardinal_1.11.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Cardinal_1.11.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/Cardinal
Package Short Url http://bioconductor.org/packages/Cardinal/
Package Downloads Report Download Stats

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