To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("EBImage")

In most cases, you don't need to download the package archive at all.

EBImage

 

Image processing and analysis toolbox for R

Bioconductor version: Release (3.1)

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and data visualization.

Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("EBImage")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("EBImage")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBImage")

 

PDF R Script Introduction to EBImage
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Visualization
Version 4.10.1
In Bioconductor since BioC 1.8 (R-2.3) (9 years)
License LGPL
Depends
Imports BiocGenerics(>= 0.7.1), methods, graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7)
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me CRImage, DonaPLLP2013, FISHalyseR, flowcatchR, HD2013SGI, imageHTS
Imports Me flowCHIC, ggtree
Suggests Me DmelSGI, HilbertVis
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source EBImage_4.10.1.tar.gz
Windows Binary EBImage_4.10.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) EBImage_4.10.1.tgz
Mac OS X 10.9 (Mavericks) EBImage_4.10.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

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