To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("copa")

In most cases, you don't need to download the package archive at all.

copa

 

   

Functions to perform cancer outlier profile analysis.

Bioconductor version: Release (3.4)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("copa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

 

PDF R Script copa Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version 1.42.0
In Bioconductor since BioC 1.8 (R-2.3) (10.5 years)
License Artistic-2.0
Depends Biobase, methods
Imports
LinkingTo
Suggests colonCA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source copa_1.42.0.tar.gz
Windows Binary copa_1.42.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) copa_1.42.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/copa/tree/release-3.4
Package Short Url http://bioconductor.org/packages/copa/
Package Downloads Report Download Stats

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