aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: Release (2.14)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("aCGH")

To cite this package in a publication, start R and enter:

    citation("aCGH")

Documentation

PDF R Script aCGH Overview
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Suggests
System Requirements
URL
Depends On Me CRImage
Imports Me ADaCGH2, snapCGH
Suggests Me beadarraySNP

Package Downloads

Package Source aCGH_1.42.0.tar.gz
Windows Binary aCGH_1.42.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) aCGH_1.42.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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