affyILM

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: Release (2.14)

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyILM")

To cite this package in a publication, start R and enter:

    citation("affyILM")

Documentation

PDF R Script affyILM1.3.0
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.16.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL version 3
Depends R (>= 2.10.0), methods, gcrma
Imports affxparser(>= 1.16.0), affy, graphics, methods, Biobase
Suggests AffymetrixDataTestFiles
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source affyILM_1.16.0.tar.gz
Windows Binary affyILM_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affyILM_1.16.0.tgz
Mac OS X 10.9 (Mavericks)
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